Bioinformatics & High Performance Computing (HPC)
A resource guide for bioinformatics, biological data analysis, and research computing at CSU
Resources at CSU
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Bioinformatics ClubJoin CSU's very own Bioinformatics Club!
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Bioinformatics Consultant - College of Agricultural SciencesDr. Jean Challacombe is a bioinformatics consultant within the College of Agriculture. To submit a request, email agbioinfo@colostate.edu.
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Data Management / Mara SedlinsMara Sedlins (Mara.Sedlins@colostate.edu) provides data management consulting services for CSU. She also leads several workshops, including Data and Donuts and Coding and Cookies.
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GAUSSIGAUSSI stands for Generating, Analyzing, and Understanding Sensory and Sequencing Information. GAUSSI is a "transdisciplinary graduate training program in biosensing and computational biology."
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Genomics of Disease in Wildlife WorkshopThis annual workshop focuses on using next generation sequencing to analyze diseases in wildlife.
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Running Containers on SummitA source of copy/paste guides for running containers on Summit.
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Stat LabVisit the Stat Lab to help with study design, data analysis, and more.
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SummitCreate a Summit account, access user guides, and start running jobs with Summit.
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Tim Kaiser, HPC Support ConsultantTim Kaiser (Tim.Kaiser@colostate.edu) is a high performance computing consultant based at CSU. He can help users with Summit and help program/run other HPC jobs/analyses.
Tutorials & Workshops
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Bioinformatics.CA WorkshopsView materials from past workshops with experts in Canada.
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Bioinformatics StackExchangeSearch, post, and reply to questions and answers on this popular tech forum.
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Biostars: Bioinformatics ExplainedOnline bioinformatics community with Q&A forums, tutorials, and tools.
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GitHub BioinformaticsBioinformatics sub-topic in the GitHub community
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Proteomics Workshop from the Broad Institute"Proteomics: Everything You Wanted to Know, But Were Afraid to Ask"
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Reddit r/bioinformaticsA subreddit dedicated to bioinformatics
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SEQanswersOnline forum and wiki regarding next generation sequencing.
Resource Portals
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Data, Software, and ToolsSearchable database of bioinformatics data, software, and other resources from the Broad Institute.
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ExPASyExPASy Bioinformatics Resource Portal from the Swiss Institute of Bioinformatics (SIB).
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Nucleic Acids Research: Database Issue (2018)Each year, NAR publishes a database resource issue with details about new and old bioinformatics resources.
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Nucleic Acids Research: Database Issue (2019)Each year, NAR publishes a database resource issue with details about new and old bioinformatics resources.
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Online Bioinformatics Resources Collection (OBRC)An online bioinformatics portal from the University of Pittsburgh.